Guillaume Lecointre - Publications professionnelles

106. CHANET, B., GUINTARD, C. and G. LECOINTRE. 2014. The gas bladder of puffers and porcupinefishes (Acanthomorpha: Tetraodontiformes): Phylogenetic interpretations. Journal of Morphology 275 (8): 894-901.

105. FISLER, M., CREMIERE, C. & G. LECOINTRE. 2014. Qu’est-ce qu’un arbre des idées ? Explicitation des notions d’arbre et de phylogénie et histoire des représentations de l’arbre. Pp. 103-144 in CHARBONNAT, P., BEN HAMED M. & G. LECOINTRE. Apparenter la pensée ? Vers une phylogénie des concepts savants. Paris, Editions Matériologiques.

104. DAVESNE, D., FRIEDMAN, M., BARRIEL, V., LECOINTRE, G., JANVIER, P., GALLUT, C. and O. OTERO. 2014. Early fossils illuminate character evolution and interrelationships of Lampridiformes (Teleostei, Acanthomorpha). Zool. J. Linn. Soc. 172: 475-498.

103. FISLER, M. and G. LECOINTRE. 2013. Categorizing Ideas about Trees: A Tree of Trees. PLoS ONE 8(8): e68814. doi:10.1371/journal.pone.0068814.

102. LECOINTRE, G., AMEZIANE, N., BOISSELIER, M.C., BONILLO, C., BUSSON, F., CAUSSE, R., CHENUIL, A., COULOUX, A., COUTANCEAU, J.P., CRUAUD, C., d’UDEKEM d’ACOZ, C., DE RIDDER, C., DENYS, G., DETTAÏ, A., DUHAMEL, G., ELEAUME, M., FERAL, J.P., GALLUT, C., HAVERMANS, C., HELD, C., HEMERY, L., LAUTREDOU, A.C., MARTIN, P., OZOUF-COSTAZ, C., PIERRAT, B., PRUVOST, P., PUILLANDRE, N., SAMADI, S., SAUCEDE, T., SCHUBART, C., and B. DAVID. 2013. Is the Species Flock Concept Operational? The Antarctic Shelf Case. PLoS ONE 8(8): e68787. doi:10.1371/journal.pone.0068787.

101. CHANET, B., GUINTARD, C., BETTI, E., GALLUT, C., DETTAI, A. and G. LECOINTRE. 2013. Evidence for a close phylogenetic Relationship between the teleost orders Tetraodontiformes and Lophiiformes based on an analysis of soft anatomy. Cybium 37(3): 179-198.

100. LAUTREDOU, A.C., MOTOMURA, H., GALLUT, C., OZOUF-COSTAZ, C., CRUAUD, C., LECOINTRE, G., and A. DETTAÏ. 2013. New nuclear markers and exploration of the relationships among Serraniformes (Acanthomorpha, Teleostei): the importance of working at multiple scales. Mol. Phylogenet. Evol. 67: 140-155.

99. CHANET, B., GUINTARD, C., BOISGARD, T., FUSELLIER, M., TAVERNIER, C., BETTI, E., MADEC, S., RICHAUDEAU, Y., RAPHAEL, C., DETTAÏ, A., and G. LECOINTRE. 2012. Visceral anatomy of ocean sunfish (Mola mola (L., 1758), Molidae,
Tetraodontiformes) and angler (Lophius piscatorius (L., 1758), Lophiidae,
Lophiiformes) investigated by non-invasive imaging techniques. C. R. Biologies 335 (2012) 744–752.

98. DETTAÏ, A., GALLUT, C., BROUILLET, S., POTHIER, J., LECOINTRE, G., and R. DEBRUYNE. 2012. Conveniently pre-tagged and pre-packaged: extended molecular identification and metagenomics using complete metazoan mitochondrial genomes. PLoS ONE 10.1371/journal.pone.0051263.

97. LAUTREDOU, A.-C., HINSINGER, D.D., GALLUT, C., CHENG, C.-H.C., BERKANI, M., OZOUF-COSTAZ, C., CRUAUD, C., LECOINTRE, G., and A. DETTAÏ. 2012. Phylogenetic footprints of an Antarctic radiation: the Trematominae (Notothenioidei, Teleostei). Mol. Phylogenet. Evol. 65: 87-101.

96. LECOINTRE, G. 2012. Phylogeny and systematics of Antarctic teleosts: methodological and evolutionary issues, pp. 97-117 In di Prisco, G. and Verde, C. (Eds.) Adaptation and Evolution in Marine Environments - The Impacts of Global Change on Biodiversity. Book series directed by Kallenborn, R., Walton, D. and di Prisco, G. (Eds.) « From Pole to Pole ». Springer Verlag.

95. DETTAI, A., BERKANI, M., LAUTREDOU, A.-C., LI, B., COULOUX, A., LECOINTRE, G., OZOUF-COSTAZ, C., and C. GALLUT. 2012. Tracking the elusive monophyly of nototheniid fishes (Teleostei) with multiple mitochondrial and nuclear markers. Marine Genomics 8:49-58. doi: 10.1016/j.margen.2012.02.003.

94. CARBONELL, P., LECOINTRE, G. and J.L. FOULON. 2011. Origins of Specificity and Promiscuity in Metabolic Networks. J. Biol. Chem. 286: 43994-44004.

93. LECOINTRE, G. 2011. Que représente-t-on avec un arbre ? pp. 9-40 in « L’arbre du Vivant existe-t-il ? » Biosystéma 28. Paris, Société Française de Systématique.

92. REY O., BONILLO C., GALLUT C., CRUAUD C., DETTAÏ A., OZOUF-COSTAZ C. and G. LECOINTRE, 2011. Naked dragonfishes Gymnodraco acuticeps and G. victori (Bathydraconidae, Notothenioidei) off Terre Adélie are a single species. Cybium 35(2): 111-119.

91. LECOINTRE, G. 2011. One-eyed biodiversity. C. R. Palevol. 10: 331-334. G.,

90. TOMASZKIEWICZ M., HAUTECOEUR M., COUTAAZ. 2011. Comparative cytogenetic studies of the Nototheniidae (Teleostei : Acanthomorpha) from the Indian (Kerguelen-Heard Plateau) and Atlantic (South Georgia, South Sandwich, Falkland/malvinas, Bouvet Islands) sectors of the Southern Ocean. pp 109-121. In: NCEAU J.P., BONILLO C., DETTAÏ A., MAZZEI F., GHIGLIOTTI L., PISANO E., COULOUX A., CHANET B., LECOINTRE G., DETRICH H.W.III, DUHAMEL G., and C. OZOUF-COSTDuhamel G. & Welsford D., Eds. The Kerguelen Plateau : marine ecosystems and fisheries. Société Française d’Ichtyologie, 304pp.

89. DETTAï, A., ADAMOWIZC, S.J., ALLCOCK, L., ARANGO, C.P., BARNES D.-K., BARRATT I., CHENUIL, A., COULOUX, A., CRUAUD, C., DAVID, B., DENIS, F., DENYS, G., DIAZ, A., ELEAUME, M., FERAL, J.P., FROGER, A., GALLUT, C., GRANT, R., GRIFFITHS, H.J., HELD, C., HEMERY, L., HOSIE, G., KUKLINSKI, P., LECOINTRE, G., LINSE, K., LOZOUET, P., MAH, C., MONNIOT, F., NORMAN, M.D., O'HARA, T., OZOUF-COSTAZ, C., PIEDALLU, C., PIERRAT, B., POULIN, E., PUILLANDRE, N., RIDDLE, M., SAMADI, S., SAUCEDE, T., SCHUBART, C., SMITH, P.J., STEVENS, D.W., STEINKE, D., STRUGNELL, J.M., TARNOWSKA, K., WADLEY, V., and N. AMEZIANE. 2011. DNA Barcoding and molecular systematics of the benthic and demersal organisms of the CEAMARC survey. Polar Science (5): 298-312.

88. JANKO, K., MARSHALL C., MUSILOVA Z., VAN HOUDT J., COULOUX A., CRUAUD C., and G. LECOINTRE. 2011. Multilocus analyses of an Antarctic fish species flock (Teleostei, Notothenioidei, Trematominae): Phylogenetic approach and test of the early-radiation event.Mol. Phylogenet. Evol. 60 (3) : 305-316.

87. LECOINTRE, G., GALLUT C., BONILLO, C., COULOUX A., OZOUF-COSTAZ C. and A. DETTAÏ. 2011. The Antarctic fish genus Artedidraco is paraphyletic (Teleostei, Notothenioidei, Artedidraconidae). Polar biology 34 (8) : 1135-1145.

86. DETTAI, A., LAUTREDOU, A.C., BONILLO, C., GOIMBAULT, E., BUSSON, F., CAUSSE, R., COULOUX, A., CRUAUD, C., DUHAMEL, G., DENYS, G., HAUTECOEUR, M., IGLESIAS S., KOUBBI, P., LECOINTRE, G., MOTEKI, M., PRUVOST, P., TERCERIE, S. and C. OZOUF-COSTAZ. 2011. The actinopterygian diversity of the CEAMARC cruises : Barcoding and molecular taxonomy as a multi-level tool for new findings. Deep-Sea Research II, 58: 250-263.

85. LAUTREDOU, AC., BONILLO, C., DENYS, G., CRUAUD, C., OZOUF-COSTAZ, C., LECOINTRE G. and A. DETTAI. 2010. Moleculat taxonomy and identification within the Antarctic genus Trematomus (Notothenioidei, Teleostei): How valuable is barcoding with COI ? Polar Science 4: 333-352.

84. LI, B, DETTAI, A., and G. LECOINTRE, 2010. Rely.py, a python script to detect reliable clades. Molecular Phylogenetics and Evolution 54: 306-308.

83. G. LECOINTRE, 2009. Créationnismes et Evolution. La pensée 360 : 99-112.

82. G. LECOINTRE, 2009. L’exportation de la pensée phylogénétique en biochimie. Pp. 705-729 In HEAMS, T., HUNEMAN, P., LECOINTRE, G., SILBERSTEIN M. (Dir.). Les Mondes Darwiniens. L’évolution de l’évolution. Syllepse. Paris. 1103 pp.

81. G. LECOINTRE, 2009. Récit de l’histoire de la vie ou De l’utilisation du récit. Pp. 381-407 In HEAMS, T., HUNEMAN, P., LECOINTRE, G., SILBERSTEIN M. (Dir.). Les Mondes Darwiniens. L’évolution de l’évolution. Syllepse. Paris. 1103 pp

80. G. LECOINTRE, 2009. Filiation. Pp. 175-223 In HEAMS, T., HUNEMAN, P., LECOINTRE, G., SILBERSTEIN M. (Dir.). Les Mondes Darwiniens. L’évolution de l’évolution. Syllepse. Paris. 1103 pp.

79. G. LECOINTRE, 2009. Gonorynchiformes in the Teteostean Phylogeny : Molecules and Morphology Used to Investigate Interrelationships of the Ostariophysi. Pp. 356-400 In Grande, T. (Ed.) Gonorynchiformes and ostariophysan relationships. A Comprehensive Review. Science Publishers. Enfield. New Hampshire, USA.

78. LI, B. and G. LECOINTRE, 2009. Formalizing reliability in the taxonomic congruence approach.. Zoologica Scripta 38(1): 101-112.

77. LI, B., DETTAÏ, A., CRUAUD, C., COULOUX, A., DESOUTTER-MENIGER M. and G. LECOINTRE. 2009. RNF213, a new nuclear marker for acanthomorph phylogeny.. Molecular Phylogenetics and Evolution. 50: 345-363.

76. JONES, C.D., ANDERSON M.E., BALUSHKIN A.V., DUHAMEL, G., EAKIN R.R., EASTMAN, J.T., KUHN, K.L., LECOINTRE, G., NEAR, T.J., NORTH, A.W., STEIN, D.L., VACCHI, M. and H.W. DETRICH III. 2008. Diversity, relative abundance, new locality records and population structure of antarctic demersal fishes from the northern Scotia Arc islands and Bouvetoya.. Polar. Biol. 31: 1481-1497.

74. DETTAI, A., DI PRISCO, G., LECOINTRE, G., PARISI E. and C. VERDE. 2008. Inferring Evolution of Fish Proteins : The Globin Case Study. In Methods in enzymology 436: 540-570

73. MARKOV, G., LECOINTRE, G., DEMENEIX B. and V. LAUDET, 2008. The ‘‘street light syndrome’’, or how protein taxonomy can bias experimental manipulations. In BioEssays 30:349–357.

72. LECOINTRE, G. 2007. Apports de la systématique moléculaire en zoologie. Bulletin de la société zoologique de France 132(4): 251-260.

71. DETTAÏ, A., KOUBBI, P., LECOINTRE, G. and OZOUF-COSTAZ, C. 2007. Current French Ichtyological research in the Antarctic Ocean: present programmes and perspectives for the IPY. International Symposium: Polar environment and climate: the challenges, pp. 134-136.

69. CUNCHILLOS, C. and LECOINTRE, G. 2007. Ordering events of biochemical evolution. Biochimie 89 : 555-573.

68. LECOINTRE, G. 2007. Comprendre le matérialisme par son histoire. In CHARBONNAT, P. Histoire des philosophies matérialistes. Syllepse, Paris. Pp. 13-33.

67. GIORDANO, D., PARRILLI, E ., DETTAI, A., RUSSO, R., BARBIERO, G., MARINO, G.,LECOINTRE, G., DI PRISCO, G. and C. VERDE. 2007. The truncated hemoglobins in the Antarctic psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125. Gene. Available online.

66. MAZZEI, F., GHIGLIOTTI, L., LECOINTRE, G., OZOUF-COSTAZ, C., COUTANCEAU J.P., DETRICH III W., and E. PISANO. 2006. Karyotypes of basal lineages in notothenioid fishes: the genus Bovichtus. Polar Biol. 29: 1071-1076.

65. VERDE, C., BALESTRIERI, M., DE PASCALE D., PAGNOZZI, D., LECOINTRE, G. and G. DI PRISCO. 2006. The oxygen transport system in three species of the boreal fish family Gadidae. Molecular phylogeny of hemoglobin. J. Biol. Chem. 281 (31): 22073-22084.

64. VERDE, C., LECOINTRE, G. and G. DI PRISCO. 2006. The phylogeny of polar fishes and the structure, function and molecular evolution of hemoglobin. Polar Biol. 30: 523-539.

63. SANCHEZ, S., DETTAÏ, A., BONILLO, C., OZOUF-COSTAZ, C., DETRICH III W. and G. LECOINTRE. 2006. Molecular and morphological phylogenies of the Antarctic teleostean family Nototheniidae, with emphasis on the Trematominae. Polar Biol. 30: 155-166.

62. CUNCHILLOS, C. and LECOINTRE, G. 2005. Integrating the universal metabolism into a phylogenetic analysis. Mol. Biol. Evol. 22(1): 1-11.

61. LECOINTRE G. and DELEPORTE, P. 2005. Total evidence requires exclusion of phylogenetically misleading data. Zoologica Scripta 34(1) : 101-117.

60. IGLESIAS, S., LECOINTRE, G. and D. SELLOS. 2005. Extensive paraphylies within sharks of the order Carcharhiniformes inferred from nuclear and mitochondrial genes. Mol. Phylogenet. Evol. 34: 569-583.

59. DETTAï A. and G. LECOINTRE. 2005. Further support for the clades obtained by multiple molecular phylogenies in the acanthomorph bush. Comptes Rendus Biologies. 328: 674-689.

58. LECOINTRE G. and DELEPORTE, P. 2005. Philosophie de la systématique. Biosystema 24. Société Française de Systématique, Paris. 126 pp.

57. ESCOBAR-PARAMO P., SABBAGH A., DARLU P., PRADILLON O., VAURY C., DENAMUR, E. and G. LECOINTRE. 2004. Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study. Mol. Phylogenet. Evol. 30: 243-250.

56. DETTAï A. and G. LECOINTRE. 2004. In search for notothenioid relatives. Antarctic Science. 16(1) : 71-85.

55. LECOINTRE, G. 2004. Quelles stratégies pour l’ichtyologie ? Cybium 28(1): 5-8.

54. DETTAÏ A., BAILLY, N., VIGNES-LEBBE R. and LECOINTRE, G. 2004. Metacanthomorpha : essay on a phylogeny-oriented database for morphology-The Acanthomorph (Teleostei) example Systematic Biology 53(5) : 822-834.

53. LECOINTRE, G. 2004. Le statut de la parcimonie. In Biosystema 22 : 107-114.

52. CHEN, W.J., BONILLO, C. and LECOINTRE, G. 2003. Repeatability of Clades as Criterion of Reliability: A Case Study for Molecular Phylogeny of Acanthomorpha (Teleostei) with Larger Number of Taxa. Molecular Phylogenetics and Evolution 26 : 262-288.

51. BJEDOV, I., LECOINTRE, G., TENAILLON, O., VAURY, C., RADMAN, M., TADDEI F., DENAMUR, E. and MATIC, I. 2003. Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli. DNA repair : 2 : 417-426.

50. CUIF, J.P., LECOINTRE, G., PERRIN, C., TILLIER, A. and TILLIER, S. 2003. Patterns of Septal Biomineralization in Scleractinia Compared to their 28S RNA Phylogeny : a Dual Approach for a New Taxonomic Framework. Zoologica Scripta 32 (5) : 459-473

49. CHEN, J.-M., LECOINTRE, G., DENAMUR, E. FEREC, C. 2003. The domain structure of cystic fibrosis transmembrane conductance regulator: impact of evolutionary and comparative genomics analysis. In David N. Cooper, ed. NATURE ENCYCLOPEDIA OF THE HUMAN GENOME, Nature Publishing Group, London. Pp. 1023-1028.

48. CUNCHILLOS, C. and LECOINTRE, G. 2003. Evolution of amino acid metabolism inferred through cladistic analysis. J. Biol. Chem. 278: 47960 - 47970.

47. CUNCHILLOS, C. and LECOINTRE G. 2002. Early steps of metabolism evolution inferred by cladistic analysis of the structure of amino acid catabolic pathways. Comptes Rendus de l’Académie des Sciences 325 : 119-129.

46. DARLU, P. and LECOINTRE, G. 2002. When does the ILD test fails ? Molecular Biology and Evolution 19 (4) : 432-437.

45. DEROME, N., CHEN, W.J., DETTAI, A., BONILLO, C., and G. LECOINTRE. 2002. Phylogeny of antarctic dragon fishes (Bathydraconidae, Notothenioidei, Teleostei) and related families based on their anatomy and two mitochondrial genes. Molecular Phylogenetics and Evolution 24 : 139-152.

44. ZARAGÜETA-BAGILS R., LAVOUÉ, S., TILLIER, A., BONILLO, C. and LECOINTRE, G. 2002. Assessment of otocephalan and protacanthopterygian concepts in the light of multiple molecular phylogenies. C.R.A.S. 325 : 1191-1207.

43. HENNEQUIN, C., THIERRY, A., RICHARD, G.F., LECOINTRE, G., NGUYEN H.V. and B. DUJON. 2001. Microsatellite typing as a new marker to assess genetic diversity of Saccharomyces cerevisiae strains. Journal of Clinical Microbiology. 39 (2): 551–559.

42. GILLES, A., LECOINTRE, G., MIQUELIS, A., LOERSTCHER, M., CHAPPAZ, R., and BRUN, G. 2001. Partial combination applied to phylogeny of Europaean Cyprinids using the mitochondrial control region. Molecular Phylogenetics Evolution 19 (1) : 22-33.

41. DENAMUR, E., RACHDI, L., LECOINTRE, G., DARLU, P., TENAILLON, O., TADDEI, F., RADMAN, M., MATIC I. 2001. Quand les bactéries modulent leur vitesse d’évolution selon l’environnement. Médecine Sciences 17 : 514-516.

40. DAYRAT, B., TILLIER, A., LECOINTRE, G. and TILLIER, S. 2001. New clades of euthyneuran Gastropods (Mollusca) from 28S rDNA sequences. Molecular Phylogenetics Evolution.19 (2) : 225-235.

39. GERMOT, A., LECOINTRE, G., PLOUHINEC, J.L., LE MENTEC, C., GIRARDOT, F., and S. MAZAN. 2001. Structural evolution of OTX genes in craniates. Molecular Biology and Evolution 18(9) : 1668-1678.

38. CHEN, J.M., CUTLER, C., JACQUES, C., BOUEF, G., DENAMUR, E., LECOINTRE, G., MERCIER B., CRAMB, G. and C . FEREC. 2001. A combined analysis of the cystic fibrosis transmembrane conductance regulator: implications for structure and disease models. Molecular Biology and Evolution 18 (9) : 1771-1788.

37. ROMAN, T., LECOINTRE, G. and CHARLEMAGNE, J. 2001. Evolution of antibody diversity in bony vertebrates. Médecine-Sciences 17 : 897-902.

36. BILLARD, R. and LECOINTRE, G. 2001. Biology and conservation of sturgeon and paddlefish. Review of Fish Biology and Fisheries 10 : 355-392.

35. MATIC, I., TENAILLON, O., LECOINTRE, G., DARLU, P., RADMAN, M., TADDEI, F., and DENAMUR, E. 2001. Horizontal transfer of mismatch repair genes and the variable speed of bacterial evolution. In SYVANEN, M. and KADO, C.I. (eds), Horizontal gene transfer, chapter 14, pp. 147-155.

34. LAVOUE, S., BIGORNE, R., LECOINTRE, G. and AGNESE, J.F. 2000. Phylogenetic relationships of electric elephant-fishes (Mormyridae : Teleostei) inferred from cytochrome b sequences. Molecular Phylogenetics Evolution. 14 (1) : 1-10.

33. DENAMUR, E., LECOINTRE, G., DARLU, P., TENAILLON, O., ACQUAVIVA, C., SADAYA, C., SUNJEVARIC I., ROTHSTEIN R., ELION, J., TADDEI, F. RADMAN, M. and MATIC, I. 2000. Evolutionary implications of the frequent horizontal transfer of mismatch repair genes. Cell. 103 : 711-721.

32. BARGELLONI, L., ZANE L., DEROME, N., LECOINTRE, G., and T. PATARNELLO. 2000. Molecular zoogeography of antarctic euphausiids and notothenioids : from species phylogenies to intraspecific patterns of genetic variation. Antarctic Science. 12 (3) : 259-268.

31. CUNCHILLOS, C. et LECOINTRE, G. 2000. L’histoire du catabolisme des acides aminés aliphatiques inférée par l’analyse cladistique de deux nouveaux types de caractères : l’enzyme et la réaction enzymatique. In Caractères (V. Barriel et T. Bourgoin, eds.). BIOSYSTEMA 18, pp. 87-106.

30. LECOINTRE G. et DELEPORTE, P. 2000. Le principe du « total evidence » requiert l’exclusion de données trompeuses. In Caractères (V. Barriel et T. Bourgoin, eds.). BIOSYSTEMA 18, pp. 129-151.

29. VIDAL, N., LECOINTRE, G., VIE, J.C., and GASC, J.P. 1999. What can mitochondrial genes sequences tell us about intergeneric relationships of Pitvipers ? Kaupia, 8 : 107-112.

28. DARLU, P. and LECOINTRE, G. 1999. How powerful and robust are the incongruence length difference test ? Annual Revew of Human Genetics. 63 : 356-357.

27. LECLERC, M.C., BARRIEL, V., LECOINTRE, G. and DE REVIERS, B. 1998. Low divergence in rDNA ITS sequences among five species of Fucus (phaeophyta) suggests a very recent radiation. Journal of Molecular Evolution 46: 115-120.

26. VIDAL, N. et LECOINTRE, G. 1998. Weighting and congruence : a case study based on three mitochondrial genes in pitvipers. Moecular Phylogenetics and Evolution 9 (3): 366-374.

25. HASSANIN, A., LECOINTRE, G. and TILLIER, S. 1998. The “ Evolutionary Signal ” of homoplasy in Protein coding gene sequences and its consequences for a priori weighting in phylogeny. Comptes Rendus de l’Académie des Sciences 321: 611-620.

24. CLEMENT O., OZOUF-COSTAZ C., LECOINTRE G. and P. BERREBI. 1998. Allozymic polymorphism and phylogeny of the family Channichthyidae. In di Prisco, G., Pisano, E. and Clarke, A. (eds). Fishes of Antarctica. A biolobical Overview. Springer Verlag.pp. 299-309.

23. BARGELLONI, L. and LECOINTRE, G. 1998. Four years in Notothenioid systematics: a molecular perspective. In di Prisco, G., Pisano, E. and Clarke, A. (eds). Fishes of Antarctica. A biolobical Overview. Springer Verlag. pp. 259-273.

22. CHEN, W.J., BONILLO, C., LECOINTRE, G. 1998. Channichthyid phylogeny based on two mitochondrial genes. In di Prisco, G., Pisano, E. and Clarke, A. (eds). Fishes of Antarctica. A biolobical Overview. Springer Verlag. pp. 287-298.

21. GILLES, A., LECOINTRE, G., FAURE, E., CHAPPAZ R. & BRUN, G. 1998. Mitochondrial phylogeny of the europaean cyprinids : implications for their systematics, reticulate evolution and colonisation time. Molecular Phylogenetics and Evoution 10 (1) : 132-143.

20. DEPAQUIT, J., PERROTEY, S., LECOINTRE, G., TILLIER, A., TILLIER, S., FERTE, H., KALTENBACH, M. and LEGER, N. 1998. Systématique moléculaire des Phlebotominae (Diptera, Psychodidae). Etude pilote. Paraphylie du genre Phlebotomus. Comptes Rendus de l’Académie des Sciences 321 : 849-855.

19. LECOINTRE, G., RACHDI, L., DARLU, P. and DENAMUR, E. 1998. Escherichia coli molecular phylogeny using the Incongruence Length Difference test. Molecular Biology and Evolution. 15 (12) : 1685-1695.

18. REGNIER, V., MEDDEB, M., LECOINTRE, G., RICHARD, F., DUVERGER, A., NGUYEN V.C., DUTRILLAUX, B., BERNHEIM, A., and DANGLOT, G. 1997. Emergence and scattering of multiple neurofibromatosis (NF1)-related sequences during hominoid evolution suggest a process of pericentromeric interchromosomal transposition. Human Molecular Genetics 6(1): 9-16.

17. VIDAL, N., LECOINTRE, G., VIE, J.C., and GASC, J.P. 1997. Molecular systematics of pitvipers: paraphyly of the Bothrops complex. Comptes Rendus de l’Académie des Sciences 320: 95-101.

16. VUILLAUMIER, S., KALTENBOECK, B., LECOINTRE, G., LEHN, P. and DENAMUR, E. 1997. Phylogenetic analysis of cystic fibrosis transmembrane conductance regulator gene in mammalian species argues for the development of a rabbit model for cystic fibrosis. Molecular Biology and Evolution. 14 (4) : 372-380.

15. RITCHIE, P., LAVOUE, S. and LECOINTRE, G. 1997 Molecular phylogenetics and the evolution of antarctic notothenioid fishes. Comparative Biochemistry and Physiology. Vol. 118A (4): 1009-1025.

14. VUILLAUMIER, S., HINNRASKY, J., LECOINTRE G., LAPOUMEROULIE, B., KALTENBOECK, J., LEHN, P., PUCHELLE, E., and DENAMUR, E. 1997. L'analyse phylogénétique du gène CFTR plaide pour l'utilisation du lapin comme modèle animal dans la mucoviscidose. Médecine-Sciences. 13 : 673-677.

13. DENAMUR, E. et G. LECOINTRE. 1997. L’ADN de l’Homme de Neandertal. Médecine-Sciences. 13 : 1488-1490.

12. LECOINTRE, G., BONILLO, C., OZOUF-COSTAZ, C. and HUREAU, J.C. 1997 Molecular phylogeny of the antarctic fishes: paraphyly of the Bovichtidae and no indication for the monophyly of the Notothenioidei (Teleostei). Polar Biology. 18 (3) : 193-208.

11. LECOINTRE, G. 1997a Evolution et molécules : Denton en crise. In P. Tort (ed.). Pour Darwin. P.U.F., Paris. pp. 693-729.

9. MOLLARET, I., JAMIESON, B.G.M., ADLARD, R.D., HUGALL, A., LECOINTRE, G., CHOMBARD, C., and JUSTINE, J.L. 1997. Phylogenetic analysis of the Monogenea and their relationships with Digenea and Eucestoda inferred from 28S rDNA sequences. Molecular and Biochemical Parasitology 90: 433-438.

8. PHILIPPE, H., LECOINTRE, G., LE, H.L.V. and LE GUYADER, H. 1996. A critical study of homoplasy in molecular data using morphologically based cladograms and its consequences for character weighting. Molecular Biology and Evolution 13 (9) : 1174-1186.

7. LECOINTRE, G. and NELSON, G.J. 1996. Clupeomorpha, Sistergroup of Ostariophysi. In STIASSNY, M.L.J., PARENTI, L., and JOHNSON, D. (eds): Interrelationships of Fishes II. Academic Press. pp. 193-207.

6. LECOINTRE, G. 1996. Methodological aspects of molecular phylogeny of Fishes. Zoological Studies. 35 (3) : 161-177.

5. LECOINTRE, G. 1995. Molecular and morphological evidence for a Clupeomorpha-Ostariophysi sister-group relationship (Teleostei). In LELIEVRE, H., WENZ, S., BLIECK, A. and CLOUTIER, R. (coords.): Premiers Vertébrés et Vertébrés inférieurs.Geobios spec. pub. n° 19. pp. 205-210.

4. LECOINTRE, G. 1994a. Aspects historiques et heuristiques de l'Ichtyologie systématique. Cybium, 18 (4): 339-430.

3. LECOINTRE, G., PHILIPPE, H., LE, H.L.V. and LE GUYADER, H. 1994. How many nucleotides are required to resolve a phylogenetic problem ? The use of a new statistical method applicable to available sequences. Molecular Phylogenetics and Evolution: 3(4): 292-309.

2. LECOINTRE, G., PHILIPPE, H., LE, H.L.V. and LE GUYADER, H. 1993b. Species sampling has a major impact on phylogenetic inference. Molecular Phylogenetics and Evolution. 2 (3): 205-224.

1. LE, H.L.V., LECOINTRE, G. and PERASSO, R. 1993a. A 28S rRNA based phylogeny of the gnathostomes: first steps in the analysis of conflict and congruence with morphologically basedcladograms. Molecular Phylogenetics and Evolution. 2 (1): 31-51.